Preprint > Page 3
  • bioRxiv  ·  February 16, 2026  ·  Preprint

    Privacy-Preserving Pangenome Graphs.

    Jacob Blindenbach, Shaunak Soni, Gamze Gursoy.

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  • bioRxiv  ·  February 16, 2026  ·  Preprint

    Private Information Leakage from Polygenic Risk Scores.

    Kirill Nikitin, Gamze Gursoy.

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  • bioRxiv  ·  February 11, 2026  ·  Preprint

    Identification of target genes and regulatory networks for bone mineral density GWAS loci through systematic targeting and inhibition.

    Mohammadjavad Kahlani, Larry Mesner, Vedavathi Madhu, Lucia Wagner, Kristyna Kupkova, Hannah J Pitas, Ana C Mello, Samuel Ghatan, Tuuli Lappalainen, Neville E Sanjana, John A Morris, View Charles R Farber.

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  • bioRxiv  ·  February 12, 2026  ·  Preprint

    Evolution of oncogene amplification across 86,000 cancer cell genomes.

    Jake June-Koo Lee, Sohrab Salehi, Matthew A. Myers, Marc J. Williams, Melissa A. Yao, Duaa H. Al-Rawi, Jin Lee, Eric G. Sun, Kerstin Thol, Seongmin Choi, Eliyahu Havasov, Asher Preska Steinberg, Michelle Wu, Nicole Rusk, Caitlin Timmons, Cheryl Zi Jin Phua, Stephen Martis, Neeman Mohibullah, Parvathy Manoj, Esther Redin, Álvaro Quintanal-Villalonga, Pedram Razavi, Samuel Aparicio, Natasha Rekhtman, Viviane Tabar, Mark M. Awad, Helena A. Yu, Kenny Kwok Hei Yu, Andrea Ventura, Andrew McPherson, Charles M. Rudin, Sohrab P. Shah.

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  • bioRxiv  ·  February 12, 2026  ·  Preprint

    Genome-wide single-cell perturbation screens with VIPerturb-seq.

    Alexandra Bradu, John D. Blair, Isabella N. Grabski, Isabella Mascio, Junsuk Lee, Cecilia McCormick, Rahul Satija.

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  • bioRxiv  ·  February 12, 2026  ·  Preprint

    A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia.

    Wubin Ding, Amit Klein, Cindy Tatiana Báez-Becerra, Jonathan A. Rink, Anna Bartlett, Qiurui Zeng, Ruoxuan Wang, Rosa Gomez Castanon, Joseph R. Nery, Emma Osgood, William Owens, Alaina Petrella, Chumo Chen, Andrea Saldana Acerbo, Ariana S. Barcoma, Jiayi Liu, Kaitlyn G. Russo, Kyle W. Knutson, Carissa K. Young, Jackson K. Willier, Ceasar Barragan, Jessica Arzavala, Silvia Cho, Jordan Altshul, Derek Chan, Eshaan Soma, Jammy Luo, Manya Jain, Sarah Velazquez, Natalie Schenker-Ahmed, Guha V. Sundaram, Austin C. Manning, Yareli Sanchez, Aleksandra Bikkina, Shuai Fu, Carolyn O’Connor, Michelle Liem, Mikayla V. Marrin, Cynthia Rose, Shane N. Alt, Jillian Berry, Colin Kern, Eric Boone, Wei Tian, Yue Wu, Manoj Hariharan, Yuanyuan Fu, Yang Xie, Kai Li, Lei Chang, Wenjin Zhang, Huamin Chen, Nelson Johansen, Zoey Zhao, Jesus Flores, Chu-Yi Tai, Jacquelin Olness, Quan Zhu, Rebecca D. Hodge, Trygve E. Bakken, Ed S. Lein, Daofeng Li, Ting Wang, Xiangmin Xu, Bing Ren, Maria Margarita Behrens, Joseph R. Ecker.

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  • bioRxiv  ·  February 6, 2026  ·  Preprint

    SenNet Portal: Build, Optimization and Usage.

    Katy Borner, Philip D. Blood, Jonathan C. Silverstein, Matthew Ruffalo, Rahul Satija, Nils Gehlenborg, Brendan Honick, Andreas Bueckle, Yashvardhan Jain, Danial Qaurooni, Bill Shirey, Max Sibilla, Kay Metis, Joe Bisciotti, Richard S. Morgan, David Betancur, Geoffrey Ryan Sablosky, Morgan L Turner, So-Jin Kim, Patty J Lee, Josh Bartz, Sergii Domanskyi, Samuel T. Peters, Archibald Enninful, Negin Farzad, Rong Fan, SenNet Team, Bruce W. Herr II.

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  • bioRxiv  ·  February 7, 2026  ·  Preprint

    Integrative Single-Cell Epigenomic Atlas Annotates the Regulatory Genome of the Adult Mouse Brain.

    Zhaoning Wang, Songpeng Zu, Ethan J Armand, Timothy H Loe, Jonathan A Rink, Wanying Wu, Yang Xie, Lei Chang, Chenxu Zhu, Nicholas D Johnson, Jasper Lee, Jackson K Willier, Silvia Cho, Stella Cao, Ariana S Barcoma, Nora Emerson, Hanqing Liu, Kangli Wang, Zane A Gibbs, Xiaomeng Gao, Sunan Xu, David Guo, Zhuowen Tu, Yang E Li, Joseph R Ecker, Maria Margarita Behrens, Bing Ren.

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  • medRxiv  ·  February 6, 2026  ·  Preprint

    Transcriptomic profiling uncovers mis-splicing and gene fusions in amyotrophic lateral sclerosis.

    Huilin Xu, Tiziana Petrozziello, Adel Boudi, Shota Shibata, Sommer S. Huntress, Alireza Shahryari, Xuefang Zhao, Maheswaran Kesavan, Eric J. Granucci, Ayleen L. Castillo Torres, Ranee Zara B. Monsanto, John Lemanski, Bimal Jana, Celin E.F. De Esch, Merit E. Cudkowicz, James D. Berry, NYGC ALS Consortium, Harrison Brand, Michael E. Talkowski, Ricardo Mouro Pinto, Dadi Gao, Ghazaleh Sadri-Vakili

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  • bioRxiv  ·  February 4, 2026  ·  Preprint

    Single-cell Multiome Analysis of Chromatin State and Transcriptome in the Human Basal Ganglia.

    Lei Chang, Kai Li, Yang Xie, Guojie Zhong, Jonathan A. Rink, Cindy Tatiana Baez-Becerra, Audrey Lie, Hannah S Indralingam, Keyi Dong, Timothy Loe, Zhaoning Wang, Songpeng Zu, Joseph Colin Kern, Zoey Zhao, Eric Boone, Jesus Flores, Alexander Monell, Jacqueline Olness, Cesar Barragan, Emma Osgood, William Owens, Natalie Schenker-Ahmed, Wenjin Zhang, Di Liu, Ariana S. Barcoma, Jackson K. Willier, Kyle W. Knutson, Kaitlyn G. Russo, Jiayi Liu, Silvia Cho, Jessica Arzavala, Carissa K. Young, Guha V. Sundaram, Austin C. Manning, Yareli Sanchez, Aleksandra Bikkina, Jillian Berry, Xiaomeng Gao, Carolyn OConnor, Michelle Liem, Mikayla V. Marrin, Cynthia Rose, Shane N. Alt, Chenxu Zhu, Nathan R Zemke, Wubin Ding, Amit Klein, Yuanyuan Fu, Nelson Johansen, Trygve E. Bakken, Rebecca D. Hodge, C. Dirk Keene, Ed S. Lein, Daofeng Li, Quan Zhu, Ting Wang, Xiangmin Xu, Joseph R. Ecker, M. Margarita Behrens, Bing Ren

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