Preprint Archives - Page 24 of 24 - New York Genome Center

bioRxiv · June 16, 2020 · Preprint

Improving oligo-conjugated antibody signal in multimodal single-cell analysis.

Terkild Brink Buus, Alberto Herrera, Ellie Ivanova, Eleni Mimitou, Anthony Cheng, Thales Papagiannakopoulos, Peter Smibert, Niels Ødum, Sergei B. Koralov

bioRxiv · June 1, 2020 · Preprint

Direct detection of RNA modifications and structure using single molecule nanopore sequencing.

William Stephenson, Roham Razaghi, Steven Busan, Kevin M. Weeks, Winston Timp, Peter Smibert

bioRxiv · February 24, 2020 · Preprint

An autoimmune disease risk variant has a trans master regulatory effect mediated by IRF1 under immune stimulation.

Margot K Brandt, Sarah Kim-Hellmuth, Marcello Ziosi, Alper Gokden, Aaron Wolman, Nora Lam, Yocelyn Recinos, Veit K Hornung, Johannes Schumacher, Tuuli Lappalainen

Lappalainen Lab

bioRxiv · February 11, 2020 · Preprint

Recent Ultra-rare Inherited Mutations Identify Novel Autism Candidate Risk Genes

Amy B Wilfert, Tychele N Turner, Shwetha C Murali, PingHsun Hsieh, Arvis Sulovari, Tianyun Wang, Bradley P Coe, Hui Guo, Kendra Hoekzema, Trygve E Bakken, Lara H Winterkorn, Uday S Evani, Marta Byrska-Bishop, Rachel K Earl, Raphael A Bernier, The SPARK Consortium, Michael C Zody, Evan E Eichler

Neuropsychiatric Disease

Computational Biology Lab

bioRxiv · November 18, 2019 · Preprint

Genome-wide profiling of druggable active tumor defense mechanisms to enhance cancer immunotherapy

Rigel J Kishton, Shashank J Patel, Suman K Vodnala, Amy K Decker, Yogin Patel, Madhusudhanan Sukumar, Tori N Yamamoto, Zhiya Yu, Michelle Ji, Amanda N Henning, Devikala Gurusamy, Douglas C Palmer, Winifred Lo, Anna Pasetto, Parisa Malekzadeh, Drew C Deniger, Kris C Wood, Neville E. Sanjana, Nicholas P Restifo

Sanjana Lab

Cancer

bioRxiv · November 7, 2019 · Preprint

Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

Netha Ulahannan, Matthew Pendleton, Aditya S Deshpande, Stefan Schwenk, Julie M Behr, Xiaoguang Dai, Carly Tyer, Priyesh Rughani, Sarah Kudman, Emily Adney, Huasong Tian, David Wilkes, Juan Miguel Mosquera, David Stoddart, Daniel J Turner, Sissel Juul, Eoghan Harrington, Marcin Imielinski

Imieliński Lab

bioRxiv · October 3, 2019 · Preprint

Long non-coding RNA gene regulation and trait associations across human tissues.

O. M. de Goede, N. M. Ferraro, D. C. Nachun, A. S. Rao, F. Aguet, A. N. Barbeira, S. E. Castel, S. Kim-Hellmuth, Y. Park, A. J. Scott, B. J. Strober, GTEx Consortium, C. D. Brown, X. Wen, I. M. Hall, A. Battle, T. Lappalainen, H. K. Im, K. G. Ardlie, T. Quertermous, K. Kirkegaard, S. B. Montgomery

Lappalainen Lab

bioRxiv · September 5, 2019 · Preprint

Splotch: Robust estimation of aligned spatial temporal gene expression data.

Tarmo Aijo, Silas Maniatis, Sanja Vickovic, Kristy Kang, Miguel Cuevas, Catherine Braine, Hemali Phatnani, Joakim Lundeberg, Richard Bonneau

Phatnani Lab

Neurodegenerative Disease