Preprint > Page 15
  • bioRxiv  ·  November 16, 2023  ·  Preprint

    A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data.

    Cameron Park, Shouvik Mani, Nicolas Beltran-Velez, Katie Maurer, Satyen Gohil, Shuqiang Li, Teddy Huang, David A. Knowles, Catherine J. Wu and Elham Azizi

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  • bioRxiv  ·  November 1, 2023  ·  Preprint

    Small variant benchmark from a complete assembly of X and Y chromosomes.

    Justin Wagner, Nathan D. Olson, Jennifer McDaniel, Lindsay Harris, Brendan J. Pinto, David Jáspez, Adrián Muñoz-Barrera, Luis A. Rubio-Rodríguez, José M. Lorenzo-Salazar, Carlos Flores, Sayed Mohammad Ebrahim Sahraeian, Giuseppe Narzisi, Marta Byrska-Bishop, Uday S Evani, Chunlin Xiao, Juniper A. Lake, Peter Fontana, Craig Greenberg, Donald Freed, Paul C. Boutros, Mohammed Faizal Eeman Mootor, Lisa Murray, Kishwar Shafin, Andrew Carroll, Fritz J Sedlazeck, Melissa Wilson, Justin M. Zook

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  • bioRxiv  ·  October 27, 2023  ·  Preprint

    AlphaMissense is better correlated with functional assays of missense impact than earlier prediction algorithms.

    Alicia Ljungdahl, Sayeh Kohani, Nicholas F. Page, Eloise S. Wells, Emilie M. Wigdor, Shan Dong, Stephan J. Sanders

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  • bioRxiv  ·  October 20, 2023  ·  Preprint

    LKB1 suppresses growth and promotes the internalization of EGFR through the PIKFYVE lipid kinase.

    John Ferrarone, Jerin Thomas, Arun Unni, Yuxiang Zheng, Michal Nagiec, Eric Gardner, Oksana Mashadova, Kate Li, Nikos Koundouros, Antonino Montalbano, Meer Mustafa, Lewis Cantley, John Blenis, Neville Sanjana, Harold Varmus

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  • bioRxiv  ·  October 17, 2023  ·  Preprint

    Detecting significantly recurrent genomic connections from simple and complex rearrangements in the cancer genome.

    Shu Zhang, Kiran H Kumar, Ofer Shapira, Xiaotong Yao, Jeremiah Wala, Frank Dubois, Rose Gold, James E. Haber, Andrew Cherniack, Marcin Imielinski, Simona Dalin, Rameen Beroukhim

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  • bioRxiv  ·  October 12, 2023  ·  Preprint

    A sequence context-based germline filter for structural variant calling from tumor samples without paired normal.

    Wolu Chukwu, Siyun Lee, Alex Crane, Shu Zhang, Ipsa Mittra, Marcin Imieliński, Rameen Beroukhim, Frank Dubois, Simona Dalin

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  • bioRxiv  ·  September 12, 2023  ·  Preprint

    Multi-OMIC analysis of Huntington disease reveals a neuroprotective astrocyte state.

    Fahad Paryani, Ji-Sun Kwon, Chris W Ng, Nacoya Madden, Kenneth Ofori, Alice Tang, Hong Lu, Juncheng Li, Aayushi Mahajan, Shawn M. Davidson, Anna Basile, Caitlin McHugh, Jean Paul Vonsattel, Richard Hickman, Michael Zody, David E. Houseman, James E. Goldman, Andrew E. Yoo, Vilas Menon, Osama Al-Dalahmah

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  • bioRxiv  ·  September 12, 2023  ·  Preprint

    Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox.

    Megan D Schertzer, Andrew Stirn, Keren Isaev, Laura Pereira, Anjali Das, Claire Harbison, Stella H Park, Hans-Hermann Wessels, Neville E Sanjana, David A Knowles

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  • medRxiv  ·  September 12, 2023  ·  Preprint

    Systematic identification of disease-causing promoter and untranslated region variants in 8,040 undiagnosed individuals with rare disease.

    Alexandra C Martin Geary, Alexander JM Blakes, Ruebena Dawes, Scott D Findlay, View ORCID ProfileJenny C Lord, Susan Walker, Jonathan Talbot-Martin, Nechama Wieder, Elston N D’Souza, Maria Fernandes, Sarah Hilton, Nayana Lahiri, Christopher Campbell, Sarah Jenkinson, Christian GEL De Goede, Emily R Anderson, Christopher B Burge, Stephan J Sanders, Jamie Ellingford, Diana Baralle, Siddharth Banka, Nicola Whiffin

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