Preprint > Page 22
  • bioRxiv  ·  February 11, 2021  ·  Preprint

    A like-for-like comparison of lightweight-mapping pipelines for single-cell RNA-seq data pre-processing.

    Mohsen Zakeri, Avi Srivastava, Hirak Sarkar, Rob Patro

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  • bioRxiv  ·  January 19, 2021  ·  Preprint

    Accounting for fragments of unexpected origin improves transcript quantification in RNA-seq simulations focused on increased realism.

    Avi Srivastava, Mohsen Zakeri, Hirak Sarkar, Charlotte Soneson, Carl Kingsford, Rob Patro

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  • bioRxiv  ·  January 11, 2021  ·  Preprint

    The landscape of human brain immune response in patients with severe COVID-19.

    John F Fullard, Hao chih Lee, Georgios Voloudakis, Shengbao Suo, Zhiping Shao, Cyril Peter, Behnam Javidfar, Wen Zhang, Shan Jiang, André Corvelo, Emma Woodoff-Leith, Dushyant P Purohit, Gabriel E Hoffman, Schahram Akbarian, Mary Fowkes, John Crary, Guo-Cheng Yuan, Panos Roussos

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  • bioRxiv  ·  December 24, 2020  ·  Preprint

    Single cell analysis of blood mononuclear cells stimulated through CD3 and CD28 shows collateral activation of B and NK cells and demise of monocytes.

    Nathan Lawlor, Djamel Nehar-Belaid, Jessica D.S. Grassmann, Marlon Stoeckius, Peter Smibert, Michael L. Stitzel, Virginia Pascual, Jacques Banchereau, Adam Williams, Duygu Ucar

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  • bioRxiv  ·  December 14, 2020  ·  Preprint

    The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification.

    Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Samantha Lent, Bradley W Langhorst, V K Chaithanya Ponnaluri, Louise Williams, Karthik Padmamabhan, Raymond G Cavalcante, Anders Lundmark, Daniel Butler, Justin M Gurvitch, John M Greally, Masako Suzuki, Mark Menor, Masaki Nasu, Alicia Alonso, Caroline Sheridan, Andreas Scherer, Stephen Bruinsma, Gosia Golda, Agata Muszynska, Paweł Piotr Łabaj, Matthew A Campbell, Frank Wos, Amanda Raine, Ulrika Liljedahl, Tomas Axelsson, Charles Wang, Zhong Chen, Zhaowei Yang, Jing Li, Xiaopeng Yang, Hongwei Wang, Ari Melnick, Shang Guo, Alexander Blume, Vedran Franke, Inmaculada Ibanez de Caceres, Carlos Rodriguez-Antolin, Rocio Rosas, Justin Wade Davis, Jennifer Ishii, Dalila B Megherbi, Wenming Xiao, Will Liao, Joshua Xu, Huixiao Hong, Baitang Ning, Weida Tong, Altuna Akalin, Yunliang Wang, Youping Deng, Christopher Mason

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  • bioRxiv  ·  November 12, 2020  ·  Preprint

    Pangenome-based genome inference.

    Jana Ebler, Wayne E. Clarke, Tobias Rausch, Peter A. Audano, Torsten Houwaart, Jan Korbel, Evan E. Eichler, Michael C. Zody, Alexander T. Dilthey, Tobias Marschall
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  • bioRxiv  ·  September 29, 2020  ·  Preprint

    The functional and phenotypic diversity of single T-cell infiltrates in human colorectal cancer as correlated with clinical outcome.

    Kazuya Masuda, Adam Kornberg, Sijie Lin, Patricia Ho, Kerim Secener, Nathan Suek, Alyssa M Bacarella, Matthew Ingham, Vilma Rosario, Ahmed M Al-Masrou, Steven A Lee-Kong, P.Ravi Kiran, Kelley S Yan, Marlon Stoeckius, Peter Smibert, Paul E Oberstein, Peter A Sims, Arnold Han

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  • bioRxiv  ·  September 8, 2020  ·  Preprint

    Scalable, multimodal profiling of chromatin accessibility and protein levels in single cells.

    Eleni P Mimitou, Caleb A Lareau, Kelvin Y Chen, Andre L Zorzetto-Fernandes, Yusuke Takeshima, Wendy Luo, Tse-Shun Huang, Bertrand Yeung, Pratiksha I Thakore, James Badger Wing, Kristopher L Nazor, Shimon Sakaguchi, Leif S Ludwig, Vijay

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  • bioRxiv  ·  August 28, 2020  ·  Preprint

    De Novo Mutation in an Enhancer of EBF3 in simplex autism.

    Evin M. Padhi, Tristan J. Hayeck, Brandon Mannion, Sumantra Chatterjee, Marta Byrska-Bishop, Rajeeva Musunuri, Giuseppe Narzisi, Avinash Abhyankar, Zhang Cheng, Riana D. Hunter, Jennifer Akiyama, Lauren E. Fries, Jeffrey Ng, Nick Stong, Andrew S. Allen, Diane E. Dickel, Raphael A. Bernier, David U. Gorkin, Len A. Pennacchio, Michael C. Zody, Tychele N. Turner

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