Preprint > Page 23
  • bioRxiv  ·  December 24, 2020  ·  Preprint

    Single cell analysis of blood mononuclear cells stimulated through CD3 and CD28 shows collateral activation of B and NK cells and demise of monocytes.

    Nathan Lawlor, Djamel Nehar-Belaid, Jessica D.S. Grassmann, Marlon Stoeckius, Peter Smibert, Michael L. Stitzel, Virginia Pascual, Jacques Banchereau, Adam Williams, Duygu Ucar

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  • bioRxiv  ·  December 14, 2020  ·  Preprint

    The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification.

    Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Samantha Lent, Bradley W Langhorst, V K Chaithanya Ponnaluri, Louise Williams, Karthik Padmamabhan, Raymond G Cavalcante, Anders Lundmark, Daniel Butler, Justin M Gurvitch, John M Greally, Masako Suzuki, Mark Menor, Masaki Nasu, Alicia Alonso, Caroline Sheridan, Andreas Scherer, Stephen Bruinsma, Gosia Golda, Agata Muszynska, Paweł Piotr Łabaj, Matthew A Campbell, Frank Wos, Amanda Raine, Ulrika Liljedahl, Tomas Axelsson, Charles Wang, Zhong Chen, Zhaowei Yang, Jing Li, Xiaopeng Yang, Hongwei Wang, Ari Melnick, Shang Guo, Alexander Blume, Vedran Franke, Inmaculada Ibanez de Caceres, Carlos Rodriguez-Antolin, Rocio Rosas, Justin Wade Davis, Jennifer Ishii, Dalila B Megherbi, Wenming Xiao, Will Liao, Joshua Xu, Huixiao Hong, Baitang Ning, Weida Tong, Altuna Akalin, Yunliang Wang, Youping Deng, Christopher Mason

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  • bioRxiv  ·  November 12, 2020  ·  Preprint

    Pangenome-based genome inference.

    Jana Ebler, Wayne E. Clarke, Tobias Rausch, Peter A. Audano, Torsten Houwaart, Jan Korbel, Evan E. Eichler, Michael C. Zody, Alexander T. Dilthey, Tobias Marschall
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  • bioRxiv  ·  September 29, 2020  ·  Preprint

    The functional and phenotypic diversity of single T-cell infiltrates in human colorectal cancer as correlated with clinical outcome.

    Kazuya Masuda, Adam Kornberg, Sijie Lin, Patricia Ho, Kerim Secener, Nathan Suek, Alyssa M Bacarella, Matthew Ingham, Vilma Rosario, Ahmed M Al-Masrou, Steven A Lee-Kong, P.Ravi Kiran, Kelley S Yan, Marlon Stoeckius, Peter Smibert, Paul E Oberstein, Peter A Sims, Arnold Han

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  • bioRxiv  ·  September 8, 2020  ·  Preprint

    Scalable, multimodal profiling of chromatin accessibility and protein levels in single cells.

    Eleni P Mimitou, Caleb A Lareau, Kelvin Y Chen, Andre L Zorzetto-Fernandes, Yusuke Takeshima, Wendy Luo, Tse-Shun Huang, Bertrand Yeung, Pratiksha I Thakore, James Badger Wing, Kristopher L Nazor, Shimon Sakaguchi, Leif S Ludwig, Vijay

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  • bioRxiv  ·  August 28, 2020  ·  Preprint

    De Novo Mutation in an Enhancer of EBF3 in simplex autism.

    Evin M. Padhi, Tristan J. Hayeck, Brandon Mannion, Sumantra Chatterjee, Marta Byrska-Bishop, Rajeeva Musunuri, Giuseppe Narzisi, Avinash Abhyankar, Zhang Cheng, Riana D. Hunter, Jennifer Akiyama, Lauren E. Fries, Jeffrey Ng, Nick Stong, Andrew S. Allen, Diane E. Dickel, Raphael A. Bernier, David U. Gorkin, Len A. Pennacchio, Michael C. Zody, Tychele N. Turner

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  • bioRxiv  ·  August 19, 2020  ·  Preprint

    CRISPR-Decryptr reveals cis-regulatory elements from noncoding perturbation screens.

    Anders West Rasmussen, Tarmo Äijö, Mariano Ignacio Gabitto, Nick Carriero, Neville Sanjana, Jane Skok, Richard Bonneau

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  • bioRxiv  ·  July 30, 2020  ·  Preprint

    EdiTyper: a high-throughput tool for analysis of targeted sequencing data from genome editing experiments.

    Alexandre Yahi, Paul Hoffman, Margot Brandt, Pejman Mohammadi, Nicholas P. Tatonetti, Tuuli Lappalainen

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  • bioRxiv  ·  July 24, 2020  ·  Preprint

    Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study.

    Jonathan Foox, Scott W. Tighe, Charles M. Nicolet, Justin M. Zook, Marta Byrska-Bishop, Wayne E. Clarke, Michael M. Khayat, Medhat Mahmoud, Phoebe K. Laaguiby, Zachary T. Herbert, Derek Warner, George S. Grills, Jin Jen, Shawn Levy, Jenny Xiang, Alicia Alonso, Gary P. Schroth, Fritz J. Sedlazeck, Giuseppe Narzisi, William Farmerie, Don A. Baldwin, Christopher E. Mason

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  • bioRxiv  ·  June 20, 2020  ·  Preprint

    Phenome-scale causal network discovery with bidirectional mediated Mendelian randomization.

    Brielin C Brown, David A Knowles
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