Preprint > Page 23
  • bioRxiv  ·  August 19, 2020  ·  Preprint

    CRISPR-Decryptr reveals cis-regulatory elements from noncoding perturbation screens.

    Anders West Rasmussen, Tarmo Äijö, Mariano Ignacio Gabitto, Nick Carriero, Neville Sanjana, Jane Skok, Richard Bonneau

    Sanjana Lab Biology, Genomics & Technology
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  • bioRxiv  ·  July 30, 2020  ·  Preprint

    EdiTyper: a high-throughput tool for analysis of targeted sequencing data from genome editing experiments.

    Alexandre Yahi, Paul Hoffman, Margot Brandt, Pejman Mohammadi, Nicholas P. Tatonetti, Tuuli Lappalainen

    Lappalainen Lab Biology, Genomics & Technology
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  • bioRxiv  ·  July 24, 2020  ·  Preprint

    Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study.

    Jonathan Foox, Scott W. Tighe, Charles M. Nicolet, Justin M. Zook, Marta Byrska-Bishop, Wayne E. Clarke, Michael M. Khayat, Medhat Mahmoud, Phoebe K. Laaguiby, Zachary T. Herbert, Derek Warner, George S. Grills, Jin Jen, Shawn Levy, Jenny Xiang, Alicia Alonso, Gary P. Schroth, Fritz J. Sedlazeck, Giuseppe Narzisi, William Farmerie, Don A. Baldwin, Christopher E. Mason

    Biology, Genomics & Technology Computational Biology Lab
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  • bioRxiv  ·  June 20, 2020  ·  Preprint

    Phenome-scale causal network discovery with bidirectional mediated Mendelian randomization.

    Brielin C Brown, David A Knowles
    Knowles Lab
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  • bioRxiv  ·  June 16, 2020  ·  Preprint

    Improving oligo-conjugated antibody signal in multimodal single-cell analysis.

    Terkild Brink Buus, Alberto Herrera, Ellie Ivanova, Eleni Mimitou, Anthony Cheng, Thales Papagiannakopoulos, Peter Smibert, Niels Ødum, Sergei B. Koralov
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  • bioRxiv  ·  June 1, 2020  ·  Preprint

    Direct detection of RNA modifications and structure using single molecule nanopore sequencing.

    William Stephenson, Roham Razaghi, Steven Busan, Kevin M. Weeks, Winston Timp, Peter Smibert

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  • bioRxiv  ·  February 24, 2020  ·  Preprint

    An autoimmune disease risk variant has a trans master regulatory effect mediated by IRF1 under immune stimulation.

    Margot K Brandt, Sarah Kim-Hellmuth, Marcello Ziosi, Alper Gokden, Aaron Wolman, Nora Lam, Yocelyn Recinos, Veit K Hornung, Johannes Schumacher, Tuuli Lappalainen

    Lappalainen Lab
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  • bioRxiv  ·  February 11, 2020  ·  Preprint

    Recent Ultra-rare Inherited Mutations Identify Novel Autism Candidate Risk Genes

    Amy B Wilfert, Tychele N Turner, Shwetha C Murali, PingHsun Hsieh, Arvis Sulovari, Tianyun Wang, Bradley P Coe, Hui Guo, Kendra Hoekzema, Trygve E Bakken, Lara H Winterkorn, Uday S Evani, Marta Byrska-Bishop, Rachel K Earl, Raphael A Bernier, The SPARK Consortium, Michael C Zody, Evan E Eichler

    Neuropsychiatric Disease Computational Biology Lab
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  • bioRxiv  ·  November 18, 2019  ·  Preprint

    Genome-wide profiling of druggable active tumor defense mechanisms to enhance cancer immunotherapy

    Rigel J Kishton, Shashank J Patel, Suman K Vodnala, Amy K Decker, Yogin Patel, Madhusudhanan Sukumar, Tori N Yamamoto, Zhiya Yu, Michelle Ji, Amanda N Henning, Devikala Gurusamy, Douglas C Palmer, Winifred Lo, Anna Pasetto, Parisa Malekzadeh, Drew C Deniger, Kris C Wood, Neville E. Sanjana, Nicholas P Restifo

    Sanjana Lab Cancer
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  • bioRxiv  ·  November 7, 2019  ·  Preprint

    Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

    Netha Ulahannan, Matthew Pendleton, Aditya S Deshpande, Stefan Schwenk, Julie M Behr, Xiaoguang Dai, Carly Tyer, Priyesh Rughani, Sarah Kudman, Emily Adney, Huasong Tian, David Wilkes, Juan Miguel Mosquera, David Stoddart, Daniel J Turner, Sissel Juul, Eoghan Harrington, Marcin Imielinski

    Imieliński Lab
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