Publication Archives - Page 64 of 82 - New York Genome Center

Molecular Systems Biology · March 15, 2018

Molecular transitions in early progenitors during human cord blood hematopoiesis.

Zheng S, Papalexi E, Butler A, Stephenson W, Satija R.

Am J Respir Crit Care Med · March 6, 2018

Whole Genome Sequencing of Pharmacogenetic Drug Response in Racially Diverse Children with Asthma.

Mak AC, White MJ, Eckalbar WL, Szpiech ZA, Oh SS, Pino-Yanes M, Hu D, Goddard P, Huntsman S, Galanter J, Wu AC, Himes BE, Germer S, Vogel JM, Bunting KL, Eng C, Salazar S, Keys KL, Liberto J, Nuckton TJ, Nguyen TA, Torgerson DG, Kwok PY, Levin AM, Celedón JC, Forno E, Hakonarson H, Sleiman PM, Dahlin A, Tantisira KG, Weiss ST, Serebrisky D, Brigino-Buenaventura E, Farber HJ, Meade K, Lenoir MA, Avila PC, Sen S, Thyne SM, Rodriguez-Cintron W, Winkler CA, Moreno-Estrada A, Sandoval K, Rodriguez-Santana JR, Kumar R, Williams LK, Ahituv N, Ziv E, Seibold MA, Darnell RB, Zaitlen N, Hernandez RD, Burchard EG; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium.

Clinical and translational gastroenterology · February 20, 2018

Barrett’s esophagus is associated with a distinct oral microbiome.

Snider EJ, Compres G, Freedberg DE, Giddins MJ, Khiabanian H, Lightdale CJ, Nobel YR, Toussaint NC, Uhlemann AC, Abrams JA.

Computational Biology Lab

Nature Communications · February 23, 2018

Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.

Stephenson W, Donlin LT, Butler A, Rozo C, Bracken B, Rashidfarrokhi A, Goodman SM, Ivashkiv LB, Bykerk VP, Orange DE, Darnell RB, Swerdlow HP, Satija R.

Satija Lab

Arthritis Rheumatol · February 22, 2018

Identification of Three Rheumatoid Arthritis Disease Subtypes by Machine Learning Integration of Synovial Histologic Features and RNA Sequencing Data

Orange DE, Agius P, DiCarlo EF, Robine N, Geiger H, Szymonifka J, McNamara M, Cummings R, Andersen KM, Mirza S, Figgie M, Ivashkiv L, Pernis AB, Jiang C, Frank M, Darnell R, Lingampali N, William R, Gravallese E, Bykerk VP, Goodman SM, Donlin LT; Accelerating Medicine Partnership: RA/SLE Network.

Computational Biology Lab

Methods Mol Biol · February 2, 2018

Whole Genome Sequencing-Based Discovery of Structural Variants in Glioblastoma.

Wrzeszczynski KO, Felice V, Shah M, Rahman S, Emde AK, Jobanputra V, O Frank M, Darnell RB.

Phatnani Lab

Computational Biology Lab

Int J Mol Med · February 12, 2018

microRNA expression profiles of scar and normal tissue from patients with posterior urethral stricture caused by pelvic fracture urethral distraction defects.

Zhang K, Chen J, Zhang D, Wang L, Zhao W, Lin DY, Chen R, Xie H, Hu X, Fang X, Fu Q.

Computational Biology Lab

Bioinformatics · March 19, 2018

A Bayesian Framework for Multiple Trait Colocalization from Summary Association Statistics

Giambartolomei C, Liu JZ, Zhang W, Hauberg M, Shi H, Boocock J, Pickrell J, Jaffe AE, the CommonMind

Consortium, Pasaniuc B*, Roussos P.

Nature Genetics · January 26, 2018

DNA.Land is a framework to collect genomes and phenomes in the era of abundant genetic information.

Yuan J, Gordon A, Speyer D, Aufrichtig R, Zielinski D, Pickrell J, Erlich Y.

Genome Biol · August 15, 2018

Cell type-specific CLIP reveals that NOVA regulates cytoskeleton interactions in motoneurons.

Yuan Y, Xie S, Darnell JC, Darnell AJ, Saito Y, Phatnani H, Murphy EA, Zhang C, Maniatis T, Darnell RB.

Phatnani Lab