Publication Archives - Page 23 of 80 - New York Genome Center

Cell · August 8, 2024

Multiplexed single-cell characterization of alternative polyadenylation regulators.

Madeline H Kowalski, Hans-Hermann Wessels, Johannes Linder, Carol Dalgarno, Isabella Mascio, Saket Choudhary, Austin Hartman, Yuhan Hao, Anshul Kundaje, Rahul Satija

Satija Lab

Nature Communications · August 8, 2024

Multi-omic analysis of Huntington’s disease reveals a compensatory astrocyte state.

Fahad Paryani, Ji-Sun Kwon, Christopher W. Ng, Kelly Jakubiak, Nacoya Madden, Kenneth Ofori, Alice Tang, Hong Lu, Shengnan Xia, Juncheng Li, Aayushi Mahajan, Shawn M. Davidson, Anna O. Basile, Caitlin McHugh, Jean Paul Vonsattel, Richard Hickman, Michael C. Zody, David E. Housman, James E. Goldman, Andrew S. Yoo, Vilas Menon & Osama Al-Dalahmah

Computational Biology Lab

Scientific Reports · August 1, 2024

A methylation risk score for chronic kidney disease: a HyperGEN study.

Alana C. Jones, Amit Patki, Vinodh Srinivasasainagendra, Bertha A. Hidalgo, Hemant K. Tiwari, Nita A. Limdi, Nicole D. Armstrong, Ninad S. Chaudhary, Bré Minniefield, Devin Absher, Donna K. Arnett, Leslie A. Lange, Ethan M. Lange, Bessie A. Young, Clarissa J. Diamantidis, Stephen S. Rich, Josyf C. Mychaleckyj, Jerome I. Rotter, Kent D. Taylor, Holly J. Kramer, Russell P. Tracy, Peter Durda, Silva Kasela, Tuuli Lappalinen, Yongmei Liu, W. Craig Johnson, David J. Van Den Berg, Nora Franceschini, Simin Liu, Charles P. Mouton, Parveen Bhatti, Steve Horvath, Eric A. Whitsel & Marguerite R. Irvin

Lappalainen Lab

Biology, Genomics & Technology Population Genomics

Genome Biology · July 18, 2024

Leveraging neighborhood representations of single-cell data to achieve sensitive DE testing with miloDE.

Alsu Missarova, Emma Dann, Leah Rosen, Rahul Satija & John Marioni

Satija Lab

American Journal of Human Genetics · July 11, 2024

The DARC side of genetics in cancer: Breast cancer disparities.

Rachel Martini, Melissa B. Davis

M. Davis Lab

Cancer

The EMBO Journal · July 1, 2024

YTHDC1 m6A-dependent and m6A-independent functions converge to preserve the DNA damage response.

Daniel Elvira-Blázquez, José Miguel Fernández-Justel, Aida Arcas, Luisa Statello, Enrique Goñi, Jovanna González, Benedetta Ricci, Sara Zaccara, Ivan Raimondi, Maite Huarte

Vicković Lab

BMC Genomics · June 29, 2024

Rare variant analyses validate known ALS genes in a multi-ethnic population and identifies ANTXR2 as a candidate in PLS.

Tess D. Pottinger, Joshua E. Motelow, Gundula Povysil, Cristiane A. Martins Moreno, Zhong Ren, Hemali Phatnani, The New York Genome Center ALS Sequencing Consortium, Timothy J. Aitman, Javier Santoyo-Lopez, Scottish Genomes Partnership, Hiroshi Mitsumoto, ALS COSMOS Study Group, PLS COSMOS Study Group, GTAC Investigators, David B. Goldstein & Matthew B. Harms

Phatnani Lab

Neurodegenerative Disease

Journal of Biomedical Informatics · June 25, 2024

Privacy-preserving model evaluation for logistic and linear regression using homomorphically encrypted genotype data.

Seungwan Hong, Yoolim A Choi, Daniel S Joo, Gamze Gürsoy

Chest Journal · June 28, 2024

Clinical Impact of Telomere Length Testing for Interstitial Lung Disease.

David Zhang, Christina M Eckhardt, Claire McGroder, Shannon Benesh, Julie Porcelli, Christopher Depender, Kelsie Bogyo, Joseph Westrich, Amanda Thomas-Wilson, Vaidehi Jobanputra, Christine K Garcia

Biology, Genomics & Technology

Bioinformatics · June 20, 2024