Publication Archives - Page 12 of 82 - New York Genome Center

Nature Communications · August 12, 2025

Improving reproducibility of differentially expressed genes in single-cell transcriptomic studies of neurodegenerative diseases through meta-analysis.

Nathan Nakatsuka, Drew Adler, Longda Jiang, Austin Hartman, Evan Cheng, Eric Klann, Rahul Satija.

Neurodegenerative Disease

Science · August 7, 2025

Predicting expression-altering promoter mutations with deep learning.

Kishore Jaganathan, Nicole Ersaro, Gherman Novakovsky, Yuchuan Wang, Terena James, Jeremy Schwartzentruber, Petko Fiziev, Irfahan Kassam, Fan Cao, Johann Hawe, Henry Cavanagh, Ashley Lim, Grace Png, Jeremy McRae, Abhimanyu Banerjee, Arvind Kumar, Jacob Ulirsch, Yan Zhang, Francois Aguet, Pierrick Wainschtein, Laksshman Sundaram, Adriana Salcedo, Sofia Kyriazopoulou Panagiotopoulou, Delasa Aghamirzaie, Evin Padhi, Ziming Weng, Shan Dong, Damian Smedley, Mark Caulfield, Anne O’Donnell-Luria, Heidi L Rehm, Stephan J Sanders, Anshul Kundaje, Stephen B Montgomery, Mark T Ross, Kyle Kai-How Farh.

Sanders Lab

Frontiers in Systems Biology · July 2, 2025

Learning Gaussian Graphical Models from Correlated Data.

Zeyuan Song, Sophia Gunn, Stefano Monti, Gina Marie Peloso, Ching-Ti Liu, Kathryn Lunetta, Paola Sebastiani.

Singh Lab

Neuropsychiatric Disease

JAMA Internal Medicine · August 1, 2025

Diseases Common in Persons With Cystic Fibrosis Among CFTR Heterozygotes.

Chenjie Zeng, Sangwoo T Han, Thomas A Cassini, Karen S Raraigh, Tam C Tran, James Yang, Garry R Cutting, Joshua C Denny.

Clinical Lab

Genetics in Medicine · July 2, 2025

Venous thromboembolism laboratory testing (factor V Leiden and factor II c.∗97G>A), 2025 revision: A technical standard of the American College of Medical Genetics and Genomics (ACMG).

Benjamin E Kang, Shulin Zhang, Harry Lesmana, Jeffrey Dungan, Kara Reynolds, Saurav Guha, Hunter Best.

Clinical Lab

Biological Psychiatry: Cognitive Neuroscience and Neuroimaging · August 1, 2025

Deriving Mendelian Randomization-based Causal Networks of Brain Imaging Phenotypes and Bipolar Disorder.

Shane O’Connell, Brielin C Brown, Dara M Cannon, Pilib Ó Broin, Nadine Parker, Dag Alnæs, Lars T Westlye, Saikat Banerjee, Leila Nabulsi, Emma Corley, Ole A Andreassen, David A Knowles, Niamh Mullins.

Knowles Lab

Neuropsychiatric Disease

American Journal of Respiratory and Critical Care Medicine. · August 2, 2025

Deficient FANCL Predisposes to Endothelial Damage: A New Therapeutic Target for Pulmonary Hypertension.

Shiyun Liu, Xiaoqian Shan, Yufei Sun, Haixia Chen, Huazhuo Feng, Shaocong Mo, Changlei Bao, Junqi Zhu, Zizhou Zhang, Feng Wei, Xiuzhen Bai, Ran Xu, Jiaxuan Lai, Haiyun Luo, Chenting Zhang, Xiaoyun Luo, Qian Jiang, Yuqin Chen, Yuqi Zhou, Haiyang Tang, Lei Xu, Wenju Lu, Rong Guo, Chunli Liu, Zifeng Yang, Jason X.-J. Yuan, Xinlin XuXinlin Xu, Dongyi XuDongyi Xu, Jian WangJian Wang, and Kai YangKai Yang.

Zhu Lab

NPJ Digit Med. · August 2, 2025

Multi-domain rule-based phenotyping algorithms enable improved GWAS signal.

Abigail Newbury, Ahmed Elhussein, Gamze Gürsoy.

Immunity · July 29, 2025

Asynchronous aging and turnover of human circulating and tissue-resident memory T cells across sites.

Nora Lam, J Carlos Angel, Bruce A Buchholz, YoonSeung Lee , Stuart P Weisberg, Brea H Brown, Julia Davis-Porada, Daniel P Caron, Isaac J Jensen, Peter A Szabo, Basak B Ural, Steven B Wells, Masaru Kubota, Rei Matsumoto, Maigan Brusko, Todd M Brusko, Chao Lu, Andrew J Yates, Donna L Farber.

Nature Communications · July 29, 2025

Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox.

Megan D. Schertzer, Andrew Stirn, Keren Isaev, Laura Pereira, Stella H. Park, Anjali Das, Aline Réal, Erin D. Jeffery, Claire Harbison, Hans-Hermann Wessels, Gloria M. Sheynkman, Neville E. Sanjana & David A. Knowles

Knowles Lab Sanjana Lab

Biology, Genomics & Technology