Publications

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Nature Biotechnology. 2023 May 25.
Dictionary learning for integrative, multimodal and scalable single-cell analysis.
Nature Methods 2022 Dec. 22.
Efficient combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq.
Nature Biotechnology. 2022 Dec. 19.
Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution.
Nature Biotechnology. 2022 March 24.
Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro
Cell Genomics. 2022 March 9.
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.
Genome Biology. 2022 Jan. 18.
Comparison and evaluation of statistical error models for scRNA-seq.
Genome Biology. 2021 Dec. 6.
geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq.
The Plant Cell. 2021 Nov. 15
Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems.
Nature Methods. 2021`Nov. 1.
Single-cell chromatin state analysis with Signac.
Nature. 2021 Sept. 8.
A roadmap for the Human Developmental Cell Atlas.
Nature Biotechnology. 2021 June 3.
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells.
Cell. 2021 May 31.
Integrated analysis of multimodal single-cell data.
Nature Immunology. 2021 May 6.
A latent subset of human hematopoietic stem cells resists regenerative stress to preserve stemness.
Nature Genetics. 2021 Mar. 1.
Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens.
Bioinformatics. 2021 Jan. 20.
Compression of quantification uncertainty for scRNA-seq counts.
PLOS Computational Biology. 2021 Jan 11.
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data.
Nature Communications. 2020 Oct. 30.
Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis.
Cell. 2020 June 24.