Publications

33 Results (Filters Applied)

Sanjana Lab x

iScience. 2021 Oct. 29.

Automated design of CRISPR prime editors for thousands of human pathogenic variants.

John A Morris, Jahan A Rahman, Xinyi Guo, Neville E Sanjana

Cell Genomics. 2021 Sept. 3.

Transcriptome-wide Cas13 guide RNA design for model organisms and viral RNA pathogens.

Xinyi Guo, Hans-Hermann Wessels, Alejandro Méndez-Mancilla, Daniel Haro, Neville E. Sanjana

Genome Biology. 2021 Aug. 23.

Integrative approach identifies SLC6A20 and CXCR6 as putative causal genes for the COVID-19 GWAS signal in the 3p21.31 locus.

, Zharko Daniloski, , Benjamin R. tenOever, Neville E. Sanjana, Tuuli Lappalainen

Nature Reviews Molecular Cell Biology. 2021 Aug. 11.

Voices of the new generation: open science is good for science (and for you).

Sanjana NE.

Cell Chemical Biology. 2021 Aug 2.

Chemically modified guide RNAs enhance CRISPR-Cas13 knockdown in human cells.

Alejandro Méndez-Mancilla, Hans-Hermann Wessels, Mateusz Legut, Anastasia Kadina, Megumi Mabuchi, John Walker, G. Brett Robb, Kevin Holden, Neville E Sanjana

Nature Biotechnology. 2021 May 19.

Tracking cell lineages to improve research reproducibility.

Zaaijer S, Groen SC, Sanjana NE.

Nature Biotechnology 2021 Apr. 29.

Profiling the genetic determinants of chromatin accessibility with scalable single-cell CRISPR screens.

Noa Liscovitch-Brauer, Antonino Montalbano, Jiale Deng, Alejandro Méndez-Mancilla, Hans-Hermann Wessels, Nicholas G. Moss, Chia-Yu Kung, Akash Sookdeo, Xinyi Guo, Evan Geller, Suma Jaini, Peter Smibert & Neville E. Sanjana

Genome Biology. 2021 Mar. 4.

Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity.

Sorek M, Oweis W, Nissim-Rafinia M, Maman M, Simon S, Hession CC, Adiconis X, Simmons SK, Sanjana NE, Shi X, Lu C, Pan JQ, Xu X, Pouladi MA, Ellerby LM, Zhang F, Levin JZ, Meshorer E.

eLife. 2021 Feb. 11.

The Spike D614G mutation increases SARS-CoV-2 infection of multiple human cell types.

Zharko Daniloski, Tristan X. Jordan, Juliana K. Ilmain, Xinyi Guo, Gira Bhabha, Benjamin R. tenOever, Neville E. Sanjana

Cell. 2020 Oct. 24.

Identification of required host factors for SARS-CoV-2 infection in human cells.

Zharko Daniloski, Tristan X. Jordan, Hans-Hermann Wessels, Daisy A. Hoagland, Silva Kasela, Mateusz Legut, Silas Maniatis, Eleni P. Mimitou, Lu Lu, Evan Geller, Oded Danziger, Brad R. Rosenberg, Hemali Phatnani, Peter Smibert, Tuuli Lappalainen, Benjamin R. tenOever, Neville E. Sanjana

Nature Biotechnology. 2020 Mar. 16.

Massively parallel Cas13 screens reveal principles for guide RNA design.

Hans-Hermann Wessels, Alejandro Méndez-Mancilla, Xinyi Guo, Mateusz Legut, Zharko Daniloski & Neville E. Sanjana.

Cell Reports. 2020 Mar. 3

High-Throughput Screens of PAM-Flexible Cas9 Variants for Gene Knockout and Transcriptional Modulation.

Legut M, Daniloski Z, Xue X, McKenzie D, Guo X, Wessels HH, Sanjana NE.

Stem Cell Research. 2019 Nov. 1.

Generation of a knock-in MAP2-tdTomato reporter human embryonic stem cell line with inducible expression of NEUROG2/1 (NYGCe001-A).

Lu C, Sanjana NE.

Nature Biomedical Engineering. 2019 Sep. 23.

Immunomagnetic cell sorting.

Legut M, Sanjana NE.

Cell Systems. 2019

Identification of Cancer Drivers at CTCF Insulators in 1,962 Whole Genomes.

Eric Minwei Liu, Alexander Martinez-Fundichely, Bianca Jay Diaz, Boaz Aronson, Tawny Cuykendall, Matthew MacKay
Priyanka Dhingra, Elissa W.P. Wong, Ping Chi, Effie Apostolou, Neville E. Sanjana, Ekta Khurana

Nature Methods. 2019 Apr 22.

Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells.

Eleni P. Mimitou, Anthony Cheng, Antonino Montalbano, Stephanie Hao, Marlon Stoeckius, Mateusz Legut, Timothy Roush, Alberto Herrera, Efthymia Papalexi, Zhengqing Ouyang, Rahul Satija, Neville E. Sanjana, Sergei B. Koralov & Peter Smibert.

FASEB J. 2019 Jan. 30.

Overexpression of NEUROG2 and NEUROG1 in human embryonic stem cells produces a network of excitatory and inhibitory neurons.

Lu C, Shi X, Allen A, Baez-Nieto D, Nikish A, Sanjana NE, Pan JQ.

Cell Stem Cell. 2018 Aug, 2.

GFAP Mutations in Astrocytes Impair Oligodendrocyte Progenitor Proliferation and Myelination in an hiPSC Model of Alexander Disease.

Li L, Tian E, Chen X, Chao J, Klein J, Qu Q, Sun G, Sun G, Huang Y, Warden CD, Ye P, Feng L, Li X, Cui Q, Sultan A, Douvaras P, Fossati V, Sanjana NE, Riggs AD, Shi Y.

PRE-PRINT PUBLICATIONS

bioRxiv. 2021 Apr. 8

Discovery of target genes and pathways of blood trait loci using pooled CRISPR screens and single cell RNA sequencing.

John A Morris, Zharko Daniloski, Júlia Domingo, Timothy Barry, Marcello Ziosi, Dafni A Glinos, Stephanie Hao, Eleni Mimitou, Peter Smibert, Kathryn Roeder, Eugene Katsevich, Tuuli Lappalainen, Neville E Sanjana

bioRxiv. 2021 Jan. 14.

An Effector Index to Predict Causal Genes at GWAS Loci

Vincenzo Forgetta, Lai Jiang, Nicholas A Vulpescu, Megan S Hogan, Siyuan Chen, John A Morris, Stepan Grinek, Christian Benner, Dong-Keun Jang, Quy Hoang, Noel Burtt, Jason A Flannick, Mark I Mccarthy, Eric Fauman, Celia MT Greenwood, Matthew T Maurano, J Brent Richards

bioRxiv. 2020 Nov. 23.

The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by pausing POL II at pro-differentiation genes.

Görkem Garipler, Congyi Lu, Alexis Morrissey, Lorena S. Lopez-Zepeda, Simon E. Vidal, Begüm Aydin, Matthias Stadtfeld, Uwe Ohler, Shaun Mahony, Neville E. Sanjana, Esteban O. Mazzoni

bioRxiv. 2020 August 19.

CRISPR-Decryptr reveals cis-regulatory elements from noncoding perturbation screens.

Anders West Rasmussen, Tarmo Äijö, Mariano Ignacio Gabitto, Nick Carriero, Neville Sanjana, Jane Skok, Richard Bonneau

bioRxiv. 2019 Nov. 18.

Genome-wide profiling of druggable active tumor defense mechanisms to enhance cancer immunotherapy

, , Suman K Vodnala, Amy K Decker, Yogin Patel, Madhusudhanan Sukumar, , Zhiya Yu, Michelle Ji, Amanda N Henning, Devikala Gurusamy, Douglas C Palmer, Winifred Lo, , Parisa Malekzadeh, Drew C Deniger, Kris C Wood, Neville E. Sanjana, Nicholas P Restifo

Faculty Labs

NYGC Labs