Publications

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Nature Communications. 2022 June 13.
Gene expression signatures of individual ductal carcinoma in situ lesions identify processes and biomarkers associated with progression towards invasive ductal carcinoma.
Nature Biotechnology. 2022 May 30.
Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing.
Nature Communications. 2022 Apr. 28.
Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression.
Cell Genomics. 2022 Apr. 28.
Benchmarking challenging small variants with linked and long reads.
Nature Genetics. 2022 Apr. 11.
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes.
Nature Communications. 2022 March 28.
Nasal airway transcriptome-wide association study of asthma reveals genetically driven mucus pathobiology.
Cell Reports Medicine. 2022 Feb. 15.
System-wide transcriptome damage and tissue identity loss in COVID-19 patients.
Nature Biotechnology. 2022 Feb. 7.
Curated variation benchmarks for challenging medically relevant autosomal genes.
iScience. 2022 Jan. 10.
Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19.
American Journal of Human Genetics. 2021 Dec. 20.
Rare coding variants in 35 genes associate with circulating lipid levels—A multi-ancestry analysis of 170,000 exomes.
Genome Research. 2021 Dec. 13.
Diverse tumorigenic consequences of human papillomavirus integration in primary oropharyngeal cancers.
Trends in Cancer. 2021 Dec. 9.
New York’s Polyethnic-1000: a regional initiative to understand how diverse ancestries influence the risk, progression, and treatment of cancers.
Genome Biology. 2021 Dec. 6.
The SEQC2 epigenomics quality control (EpiQC) study.
Microbiology Spectrum. 2021 Nov. 17.
Postvaccination SARS-COV-2 among Health Care Workers in New Jersey: A Genomic Epidemiological Study.
Nature Biotechnology. 2021 Sept. 9.
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study.
Communications Biology. 2021 Sep 1.
Rates of contributory de novo mutation in high and low-risk autism families.
mSphere. 2021 Aug. 25
Emergence of multiple SARS-CoV-2 antibody escape variants in an immunocompromised host undergoing convalescent plasma treatment.
Nature Genetics. 2021 July 26.