Our Scientific Publications
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bioRxiv · January 12, 2024 · Pre-Print
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American Journal of Human Genetics · January 4, 2023
Interaction molecular QTL mapping discovers cellular and environmental modifiers of genetic regulatory effects.
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CA Cancer J Clin · January 4, 2024
Interpreting and integrating genomic tests results in clinical cancer care: Overview and practical guidance.
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bioRxiv · December 31, 2023 · Pre-Print
Specifying cellular context of transcription factor regulons for exploring context-specific gene regulation programs.
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bioRxiv · December 26, 2023 · Pre-Print
CRISPRmap: Sequencing-free optical pooled screens mapping multi-omic phenotypes in cells and tissue.
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BMC Genomics · December 19, 2023
Evaluation of noninvasive biospecimens for transcriptome studies.
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Genome Biology · December 18, 2023
Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data.
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Nature Communications · December 15, 2023
Essential transcription factors for induced neuron differentiation.
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Genome Research · December 14, 2023
Assessing and mitigating privacy risk of sparse, noisy genotypes by local alignment to haplotype databases.
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Cell Stem Cell · December 7, 2023
SON is an essential m6A target for hematopoietic stem cell fate.
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Neuron · December 6, 2023
A reproducible signature of cytoskeletal and ALS-related genes in human motoneurons.
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Cancer Discovery · December 5, 2023
Cancer Evolution: A Multifaceted Affair.
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The American Journal of Surgical Pathology · December 4, 2023
NIPBL::NACC1 Fusion Hepatic Carcinoma.
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Genetics in Medicine · December 3, 2023
Recommendations for Risk Allele Evidence Curation, Classification, and Reporting from the ClinGen Low Penetrance/Risk Allele Working Group.
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Trends in Genetics · November 20, 2023
Next-generation forward genetic screens: uniting high-throughput perturbations with single-cell analysis.
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Nature Biotechnology · November 20, 2023
Spatial host–microbiome sequencing reveals niches in the mouse gut.
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bioRxiv · November 16, 2023 · Pre-Print
DIISCO: A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data.
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The Journal of Clinical Investigation · November 14, 2023
Spliceosome malfunction causes neurodevelopmental disorders with overlapping features.
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Nature Genetics · November 9, 2023
Most large structural variants in cancer genomes can be detected without long reads.
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bioRxiv · November 1, 2023 · Pre-Print
Small variant benchmark from a complete assembly of X and Y chromosomes.
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bioRxiv · October 27, 2023 · Pre-Print
AlphaMissense is better correlated with functional assays of missense impact than earlier prediction algorithms.